Bibliography

Bibliography

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The most valuable planetary resource we have is not the air, water and trees; it is the SCIENTIFIC METHOD itself...only through this are we able to define a synthesis of all that is physical versus biophysical, essentially ourselves and the rest of the Cosmos. As with other resources it can be corrupted and misused or abused." - T.H.L Geigy

Bibliographic Entries

DBLP IEEE Xplore ACM DL CS Bibliography

Publications (47) Presentations (6)

Publications

Books

Sidhu, A.S., Dillon, T.S., Hussain, F.K. and Chang, E. (eds) (2008) Advances in Semantic Biomedicine. Springer-Verlag, Heidelberg.
Sidhu, A.S., Dillon, T.S. and Chang, E. (eds) (2008) Biomedical Data and Applications. Springer-Verlag, Heidelberg.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2008) Protein Ontology. Springer-Verlag, New York.
Chen, J. and Sidhu, A.S. (eds) (2007) Biological Database Modeling. Artech House, Norwood.

Book Chapters

Sidhu, A.S. and Watson, C. (2008) Framework for Brain Ontology. In Sidhu, A.S., Dillon, T.S. and Chang, E. (eds), Biomedical Data and Applications. Springer, Heidelberg.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2008) Protein Data Integration Problem. In Sidhu, A.S., Dillon, T.S. and Chang, E. (eds), Biomedical Data and Applications. Springer, Heidelberg.
Sidhu, A.S., Kennedy, P.J., Simoff, S., Dillon, T.S. and Chang, E. (2007) Knowledge Discovery in Biomedical Data facilitated by Domain Ontologies. In Zhu, X. and Davidson, I. (eds), Knowledge Discovery and Data Mining: Challenges and Realities with Real World Data. Idea Group Inc., Hershey.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Data Integration through Protein Ontology. In Nigro, H.O., Císaro, S.G. and Xodo, D. (eds), Data Mining with Ontologies: Implementations, Findings, and Frameworks. Idea Group Inc., Hershey.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Protein Ontology. In Chen, J. and Sidhu, A.S. (eds), Biological Database Modeling. Artech House, New York.
Sidhu, A.S. and Chen, J. (2007) Introduction to Data Modeling. In Chen, J. and Sidhu, A.S. (eds), Biological Database Modeling. Artech House, New York, 1-10.
Sidhu, A.S., Dillon, T.S. and Sidhu, B.S. (2004) A Unified Representation of Protein Structure Databases. In Reddy, M.S. and Khanna, S. (eds), Biotechnological Approaches for Sustainable Development. Allied Publishers India, Mumbai, 396-408.

Journal Articles

Sidhu, A.S., Dillon, T.S., Chang, E. and Chen, J. (2007) Editorial: Ontologies for Bioinformatics I, International Journal of Bioinformatics Research and Applications (IJBRA), 3, 1-6.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Deployment of Protein Ontology Framework, International Journal of Applied Bioengineering, 1, 34-41.
Sidhu, A.S., Dillon, T.S., Sidhu, B.S. and Setiawan, H. (2004) Protein Knowledge Meta Model, Molecular & Cellular Proteomics, 3, S262-S263.

Invited and Refereed Conference Papers

Sidhu, A.S., Hadzic, M., Dillon, T.S. and Chang, E. (2008) Ontology Support for Biomedical Databases (Plenary Talk). 21st IEEE International Symposium on Computer-Based Medical Systems 2008 (CBMS 2008). IEEE Computer Society, Finland, to appear.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2008) Current Status of Biomedical Ontologies: Developments in 2007. In Chang, E., Damiani, E. and Dillon, T.S. (eds), 2008 IEEE International Conference on Digital Ecosystems and Technologies. IEEE Industrial Electronics Society, Thailand, to appear.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2008) Framework for Trustworthy Protein Ontology (Plenary Talk). In Zanasi, A., Brebbia, C. and Ebecken, N.F.F. (eds), 9th International Conference on Data Mining, Protection, Detection and other Security Technologies 2008 (Data Mining 2008). WIT Press, Spain, to appear.
Sidhu, A.S., Hussain, F.K., Dillon, T.S. and Chang, E. (2007) Trust based Decision Making Approach for Protein Ontology. 12th IEEE Conference on Emerging Technologies and Factory Automation. IEEE Industrial Electronics Society, Patras, Greece.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Protein Ontology Instance Store. 3rd IFIP WG 2.12 & WG 12.4 International Workshop on Web Semantics (SWWS 2006) in conjunction with OTM 2007. Springer-Verlag, Portugal.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Ontology Algebra for Composition of Protein Data Sources. 2007 IEEE Workshop on Data Mining in Bioinformatics (DMB 2007). IEEE Computer Society, Silicon Valley.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Current Status of Biomedical Ontologies: Developments in 2006. In Chang, E., Damiani, E. and Dillon, T.S. (eds), 2007 IEEE International Conference on Digital Ecosystems and Technologies. IEEE Industrial Electronics Society, Cairns, Australia, 581-585.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2007) Protein Ontology Project: 2007 Updates (Plenary Talk). In Zanasi, A., Brebbia, C. and Ebecken, N.F.F. (eds), 8th Data Mining and Information Engineering 2007 (Data Mining 2007). WIT Press, New Forest, UK.
Sidhu, A.S., Dillon, T.S., Sidhu, B.S. and Chang, E. (2006) Protein Ontology Project: 2006 Updates (Plenary Talk). In Zanasi, A., Brebbia, C. and Ebecken, N.F.F. (eds), 7th Data Mining and Information Engineering 2006 (Data Mining 2006). WIT Press, Prague, Czech Republic, 301-306.
Sidhu, A.S., Dillon, T.S., Hussain, F.K. and Chang, E. (2006) Accomplishments and Challenges of Protein Ontology. IEEE 30th Annual International Computer Software and Applications Conference (COMPSAC 2006). IEEE Computer Society, Chicago, 71-76.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Towards Semantic Interoperability of Protein Data Sources. 2nd IFIP WG 2.12 & WG 12.4 International Workshop on Web Semantics (SWWS 2006) in conjunction with OTM 2006. Springer-Verlag, France, 1835-1843.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Unification of Protein Data and Knowledge Sources. 10th International Conference on Knowledge-Based & Intelligent Information & Engineering Systems (KES 2006). Springer-Verlag, Bournemouth, UK, 728-737.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Integration of Protein Data Sources through PO. In Bressan, S., Küng, J. and Wagner, R. (eds), 17th International Conference on Database and Expert Systems Applications (DEXA 2006). Springer-Verlag, Poland, 519-527.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Protein Data Sources Management using Semantics. 1st Asian Semantic Web Conference (ASWC 2006). Springer-Verlag, Beijing, 595-601.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Advances in Protein Ontology Project. In Lee, D.J. and Nutter, B. (eds), 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006). IEEE Computer Society, Salt Lake City, Utah, 588-592.
Hussain, F.K., Sidhu, A.S., Dillon, T.S. and Chang, E. (2006) Engineering Trustworthy Ontologies: Case Study of Protein Ontology. In Lee, D.J. and Nutter, B. (eds), 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006). IEEE Computer Society, Salt Lake City, Utah, 617-622.
Hadzic, F., Dillon, T.S., Sidhu, A.S., Chang, E. and Tan, H. (2006) Mining Substructures in Protein Data (Plenary Talk). 2006 IEEE Workshop on Data Mining in Bioinformatics (DMB 2006) in conjunction with 6th IEEE ICDM 2006. IEEE Computer Society, Hong Kong, 213-217.
Sidhu, A.S., Dillon, T.S., Sidhu, B.S. and Chang, E. (2005) The Protein Ontology Project: Structured Vocabularies for Proteins (Plenary Talk). In Zanasi, A., Brebbia, C. and Ebecken, N.F.F. (eds), 6th International Conference on Data Mining, Text Mining, and their Business Applications (Data Mining 2005). WIT Press, UK, Skiathos, Greece, 95-102.
Sidhu, A.S., Dillon, T.S., Chang, E. and Sidhu, B.S. (2005) OWL, Proteins and Data Integration. In Zhang, S. and Jarvis, R. (eds), 18th Australian Joint Conference on Artificial Intelligence (AI 2005). Springer-Verlag, Sydney, 1158-1161.
Sidhu, A.S., Dillon, T.S., Chang, E. and Sidhu, B.S. (2005) Protein Ontology Development using OWL. In Grau, B.C., Horrocks, I., Parsia, B. and Schneider, P. (eds), 1st Workshop on OWL: Experiences and Directions (OWLED 2005). CEUR Workshop Proceedings (CEUR-WS.org), Galway, Ireland, 6 pages.
Sidhu, A.S., Dillon, T.S., Chang, E. and Sidhu, B.S. (2005) Protein Ontology: Semantic Data Integration in Proteomics. In Lee, D., Wong, L., Kim, S., Kim, D., Kim, C. and Tan, T. (eds), 4th International Joint Conference of InCoB, AASBi and KSBI 2005 (BIOINFO 2005). KAIST Press, Busan, Korea, 388-391.
Sidhu, A.S., Dillon, T.S., Chang, E. and Sidhu, B.S. (2005) Ontology-based Knowledge Representation for Protein Data. In Dillon, T.S. and Yu, X. (eds), 3rd International IEEE Conference on Industrial Informatics (IEEE INDIN 2005). IEEE Industrial Electronics Society, Perth, 535-539.
Sidhu, A.S., Dillon, T.S., Chang, E. and Sidhu, B.S. (2005) Protein Ontology: Vocabulary for Protein Data. In He, X., Hintz, T., Piccardi, M., Wu, Q., Huang, M. and Tien, D. (eds), 3rd International IEEE Conference on Information Technology and Applications, 2005 (IEEE ICITA 2005). IEEE Computer Society, Sydney, 465-469.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2005) Protein Ontology Project (Plenary Talk). In Ghosh, I. and Basak, S. (eds), 4th Indo-US Workshop on Mathematical Chemistry. University of Pune, Pune, India.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2005) Structured Vocabularies for Proteins. In Soh, S.L. and Goh, J. (eds), 12th International IFMBE Conference on Biomedical Engineering (IFMBE 2005). IFMBE Press, Singapore, 4 pages.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2005) Ontological Foundation for Protein Data Models. 1st IFIP WG 2.12 & WG 12.4 International Workshop on Web Semantics (SWWS 2005) in conjunction with On The Move Federated Conferences (OTM 2005). Springer-Verlag, Agia Napa, Cyprus, 916-925.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2005) An Ontology for Protein Data Models. In Zhang, Y.T., Roux, C. and Zhuang, T.G. (eds), 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2005). IEEE Engineering in Medicine and Biology Society, Shanghai, 6120-6123.
Sidhu, A.S., Dillon, T.S. and Chang, E. (2005) Creating a Protein Ontology Resource. In Chen, A.J. and Markstein, P. (eds), 2005 IEEE Computational Systems Bioinformatics Conference (CSB 2005). IEEE Computer Society, Stanford, 220-221.
Sidhu, A.S., Dillon, T.S., Sidhu, B.S. and Setiawan, H. (2004) Comprehensive Protein Database Representation. In Gramada, A. and Bourne, P. (eds), 8th International Conference on Research in Computational Biology (RECOMB 2004). ACM Press, San Diego, USA, 427-428.
Sidhu, A.S., Dillon, T.S. and Sidhu, B.S. (2004) Making of Protein Ontology (Plenary Talk). In Kavallaris, M. (ed), 2nd Australian and Medical Research Congress 2004. National Heath and Medical Research Council, Australia, Sydney, 151-152.
Sidhu, A.S., Dillon, T.S. and Setiawan, H. (2004) An XML Based Semantic Protein Map. In Zanasi, A., Ebecken, N.F.F. and Brebbia, C. (eds), 5th International Conference on Data Mining, Text Mining and their Business Applications (Data Mining 2004. WIT Press, UK, Malaga, Spain, 51-60.

Presentations

Presentation entitled "Biomedical Ontologies" at IEEE DEST 2007 at Cairns, Australia on 23 February 2007.
Presentation entitled "Protein Ontology: Unification of Protein Data" at SAX Institute e-health Research Event at University of Technology Sydney on 16 October 2006.
Presentation entitled “Protein Ontology Development: 2005 Updates" at Bringing Bioscience Together at Australian National University, Canberra on 08 December 2005.
Presentation entitled “Protein Ontology Development” at UTS Health Research Forum on 02 September 2005.
PhD Candidacy Presentation entitled "Structured Vocabularies for Proteins" at Faculty of Information Technology, University of Technology Sydney on 09 September 2004.
Presentation entitled "Semantics in Data Mining" at School of Information Systems, Curtin University of Technology in Perth, Australia on 12 August 2004.